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Journal Articles

A Continuous Protein Design Model Using Artificial Power Law in Topology Optimization

Sung K. Koh, Guangjun Liu, Wen-Hong Zhu
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Research Papers
J. Mech. Des. April 2009, 131(4): 041001.
https://doi.org/10.1115/1.3086790
Published Online: March 20, 2009
View Article titled, A Continuous Protein Design Model Using Artificial Power Law in Topology Optimization
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Topics: Design, Optimization, Proteins, Topology
Journal Articles

Improved Molecular Model of a Peptide Unit for Proteins

Raghavendran Subramanian, Kazem Kazerounian
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Research Papers
J. Mech. Des. November 2007, 129(11): 1130–1136.
https://doi.org/10.1115/1.2771230
Published Online: November 28, 2006
View Article titled, Improved Molecular Model of a Peptide Unit for Proteins
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Topics: Atoms, Errors, Proteins, Optimization, Chain
Journal Articles

Residue Level Inverse Kinematics of Peptide Chains in the Presence of Observation Inaccuracies and Bond Length Changes

Raghavendran Subramanian, Kazem Kazerounian
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Research Papers
J. Mech. Des. March 2007, 129(3): 312–319.
https://doi.org/10.1115/1.2406102
Published Online: March 13, 2006
View Article titled, Residue Level Inverse Kinematics of Peptide Chains in the Presence of Observation Inaccuracies and Bond Length Changes
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Topics: Atoms, Chain, Errors, Kinematics, Proteins, Fittings
Journal Articles

Analysis and Design of Protein Based Nanodevices: Challenges and Opportunities in Mechanical Design

Gregory S. Chirikjian, Kazem Kazerounian, Constantinos Mavroidis
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Introduction
J. Mech. Des. July 2005, 127(4): 695–698.
https://doi.org/10.1115/1.1901706
Published Online: March 2, 2005
View Article titled, Analysis and Design of Protein Based Nanodevices: Challenges and Opportunities in Mechanical Design
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Topics: Chain, Design, Kinematics, Proteins, Machinery
Journal Articles

Kinematics and Workspace Analysis of Protein Based Nano-Actuators

G. Sharma, M. Badescu, A. Dubey, C. Mavroidis, S. M. Tomassone, M. L. Yarmush
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Technical Papers
J. Mech. Des. July 2005, 127(4): 718–727.
https://doi.org/10.1115/1.1900751
Published Online: February 25, 2005
View Article titled, Kinematics and Workspace Analysis of Protein Based Nano-Actuators
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Topics: End effectors, Kinematics, Proteins, Actuators, Chain
Journal Articles

A Quadratic Programming Formulation for the Design of Reduced Protein Models in Continuous Sequence Space

Sung K. Koh, G. K. Ananthasuresh, Christopher Croke
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Technical Papers
J. Mech. Des. July 2005, 127(4): 728–735.
https://doi.org/10.1115/1.1901705
Published Online: February 25, 2005
View Article titled, A Quadratic Programming Formulation for the Design of Reduced Protein Models in Continuous Sequence Space
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Topics: Chain, Design, Optimization, Proteins, Quadratic programming
Journal Articles

Protofold: A Successive Kinetostatic Compliance Method for Protein Conformation Prediction

Kazem Kazerounian, Khalid Latif, Carlos Alvarado
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Technical Papers
J. Mech. Des. July 2005, 127(4): 712–717.
https://doi.org/10.1115/1.1867502
Published Online: August 5, 2004
View Article titled, Protofold: A Successive Kinetostatic Compliance Method for Protein Conformation Prediction
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Topics: Atoms, Proteins, Chain, Simulation, Torque
Journal Articles

Nano-Kinematics for Analysis Of Protein Molecules

Kazem Kazerounian, Khalid Latif, Kimberly Rodriguez, Carlos Alvarado
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Technical Papers
J. Mech. Des. July 2005, 127(4): 699–711.
https://doi.org/10.1115/1.1867956
Published Online: August 5, 2004
View Article titled, Nano-Kinematics for Analysis Of Protein Molecules
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Topics: Atoms, Chain, Kinematics, Proteins
Journal Articles

From Mechanisms and Robotics to Protein Conformation and Drug Design

Kazem Kazerounian, Professor, Fellow ASME
Journal: Journal of Mechanical Design
Publisher: ASME
Article Type: Technical Papers
J. Mech. Des. January 2004, 126(1): 40–45.
https://doi.org/10.1115/1.1644554
Published Online: March 11, 2004
View Article titled, From Mechanisms and Robotics to Protein Conformation and Drug Design
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Topics: Kinematics, Proteins, Drugs, Design, Chain, Robotics