Abstract

Allele frequencies for the locus D1S80 were determined in African American, Caucasian, Southeastern Hispanic, Southwestern Hispanic, and Oriental sample populations using the polymerase chain reaction and subsequent electrophoresis and silver staining of the amplified products. Due to the presence of anodal and cathodal electrophoretic variants (in reference to the steps in an allelic ladder), allele frequencies were established using a classification protocol based on the steps in the allelic ladder. All sample populations met Hardy-Weinberg expectations for D1S80. In addition, there was no evidence for association of alleles between the loci D1S80 and D1S7. The product of allele frequencies from the data from the sample populations in this study can be used in forensic analyses and paternity tests to estimate the frequency of a D1S80 DNA genotype.

References

1.
Saiki
,
R. K.
,
Scharf
,
S.
,
Faloona
,
T.
,
Mullis
,
K. B.
,
Horn
,
G. T.
,
Erlich
,
H. A.
, and
Arnheim
,
N.
, “
Enzymatic Amplification of Beta-Globin Genomic Sequences and Restriction Analysis for Diagnosis of Sickle Cell Anemia
,”
Science
 1095-9203, Vol.
230
,
1985
, pp.
1350
-
1354
.
2.
Jeffreys
,
A. J.
,
Wilson
,
V.
,
Neumann
,
R.
, and
Keyte
,
J.
, “
Amplification of Human Minisatellites by the Polymerase Chain Reaction: Towards Fingerprinting of Single Cells
,”
Nucleic Acids Research
 0305-1048, Vol.
16
,
1988
, pp.
10953
-
10971
.
3.
Boerwinkle
,
E.
,
Xiong
,
W.
,
Fourest
,
E.
, and
Chan
,
L.
, “
Rapid Typing of Tandemly Repeated Hypervariable Loci by the Polymerase Chain Reaction: Application to the Apolipoprotein B 3′ Hypervariable Region
,”
Proceedings of the National Academy of Science USA
, Vol.
86
,
1989
, pp.
212
-
216
.
4.
Horn
,
G. T.
,
Richards
,
B.
, and
Klinger
,
K. W.
, “
Amplification of a Highly Polymorphic VNTR Segment by the Polymerase Chain Reaction
,”
Nucleic Acids Research
 0305-1048, Vol.
17
,
1989
, p. 2140.
5.
Ludwig
,
E. H.
,
Friedl
,
W.
, and
McCarthy
,
B. J.
, “
High-Resolution Analysis of a Hypervariable Region in the Human Apolipoprotein B Gene
,”
American Journal of Human Genetics
 0002-9297, Vol.
48
,
1989
, pp.
458
-
464
.
6.
Kasai
,
K.
,
Nakamura
,
Y.
, and
White
,
R.
, “
Amplification of a Variable Number of Tandem Repeat (VNTR) Locus (pMCT118) by the Polymerase Chain Reaction (PCR) and Its Application to Forensic Science
,”
Journal of Forensic Sciences
 0022-1198, Vol.
35
,
1990
, pp.
1196
-
1200
.
7.
Budowle
,
B.
,
Chakraborty
,
R.
,
Giusti
,
A. M.
,
Eisenberg
,
A. J.
, and
Allen
,
R. C.
, “
Analysis of the VNTR Locus D1S80 by the PCR Followed by High-Resolution PAGE
,”
American Journal of Human Genetics
 0002-9297, Vol.
48
,
1991
, pp.
137
-
144
.
8.
Edwards
,
A.
,
Civitello
,
A.
,
Hammond
,
H. A.
, and
Caskey
,
C. T.
, “
DNA Typing and Genetic Mapping with Trimeric and Tetrameric Tandem Repeats
,”
American Journal of Human Genetics
 0002-9297, Vol.
49
,
1991
, pp.
746
-
756
.
9.
Edwards
,
A.
,
Hammond
,
H.
,
Jin
,
L.
,
Caskey
,
C. T.
, and
Chakraborty
,
R.
, “
Genetic Variation at Five Trimeric and Tetrameric Repeat Loci in Four Human Population Groups
,”
Genomics
 0888-7543, Vol.
12
,
1992
, pp.
241
-
253
.
10.
Hochmeister
,
M. N.
,
Budowle
,
B.
,
Borer
,
U. V.
,
Eggmann
,
U. T.
,
Comey
,
C. T.
, and
Dirnhofer
,
R.
, “
Typing of DNA Extracted from Compact Bone Tissue from Human Remains
,”
Journal of Forensic Sciences
 0022-1198, Vol.
36
,
1991
, pp.
1649
-
1661
.
11.
Hochmeister
,
M. N.
,
Budowle
,
B.
,
Jung
,
J.
,
Borer
,
U. V.
,
Comey
,
C. T.
, and
Dirnhofer
,
R.
, “
PCR-Based Typing of DNA Extracted from Cigarette Butts
,”
International Journal of Legal Medicine
 0937-9827, Vol.
104
,
1991
, pp.
229
-
233
.
12.
Kloosterman
,
A. D.
,
Budowle
,
B.
, and
Daselaar
,
P.
, “
PCR-Amplification and Detection of the Human D1S80 VNTR Locus: Amplification Conditions, Population Genetics, and Application in Forensic Analysis
,”
International Journal of Legal Medicine
 0937-9827, Vol.
105
,
1993
, pp.
257
-
264
.
13.
Potsch
,
L.
,
Meyer
,
U.
,
Rothschild
,
S.
,
Schneider
,
P. M.
, and
Rittner
,
C.
, “
Application of DNA Techniques for Identification Using Human Dental Pulp As a Source of DNA
,”
International Journal of Legal Medicine
 0937-9827, Vol.
105
,
1992
, pp.
139
-
143
.
14.
Prinz
,
M.
,
Grellner
,
W.
, and
Schmitt
,
C.
, “
DNA Typing of Urine Samples Following Several Years of Storage
,”
International Journal of Legal Medicine
 0937-9827, Vol.
106
,
1993
, pp.
75
-
79
.
15.
Rand
,
S.
,
Puers
,
C.
,
Skowasch
,
K.
,
Wiegand
,
P.
,
Budowle
,
B.
, and
Brinkmann
,
B.
, “
Population Genetics and Forensic Efficiency Data of Four AMPFLPs
,”
International Journal of Legal Medicine
 0937-9827, Vol.
104
,
1992
, pp.
329
-
333
.
16.
Sajantila
,
A.
,
Strom
,
M.
,
Budowle
,
B.
,
Karhunen
,
P. J.
, and
Peltonen
,
L.
, “
The Polymerase Chain Reaction and Post-Mortem Forensic Identity Testing: Application of Amplified D1S80 and HLA-DQ Alpha Loci to the Identification of Fire Victims
,”
Forensic Science International
 0379-0738, Vol.
51
,
1991
, pp.
23
-
34
.
17.
Wiegand
,
P.
,
Budowle
,
B.
,
Rand
,
S.
, and
Brinkmann
,
B.
, “
Forensic Validation of the STR Systems SE 33 and TC 11
,”
International Journal of Legal Medicine
 0937-9827, Vol.
105
,
1993
, pp.
315
-
320
.
18.
Wiegand
,
P.
,
Bajanowski
,
T.
, and
Brinkmann
,
B.
, “
DNA Typing of Debris from Fingernails
,”
International Journal of Legal Medicine
 0937-9827, Vol.
106
,
1993
, pp.
81
-
83
.
19.
Nakamura
,
Y.
,
Carlson
,
M.
,
Krapcho
,
V.
, and
White
,
R.
, “
Isolation and Mapping of a Polymorphic DNA Sequence (pMCT118) on Chromosome 1p (D1S80)
,”
Nucleic Acids Research
 0305-1048, Vol.
16
,
1988
, p. 9364.
20.
Alonso
,
A.
,
Martin
,
P.
,
Albarran
,
C.
, and
Sancho
,
M.
, “
Amplified Fragment Length Polymorphism Analysis of the VNTR Locus D1S80 in Central Spain
,”
International Journal of Legal Medicine
 0937-9827, Vol.
106
,
1993
, pp.
311
-
314
.
21.
Sajantila
,
A.
,
Budowle
,
B.
,
Strom
,
M.
,
Johnson
,
V.
,
Lukka
,
H.
,
Peltonen
,
L.
, and
Enholm
,
C.
, “
PCR Amplification of Alleles at the D1S80 Locus: Comparison of a Finnish and a North American Caucasian Population Sample, and Forensic Casework Evaluation
,”
American Journal of Human Genetics
 0002-9297, Vol.
50
,
1992
, pp.
816
-
825
.
22.
Skowasch
,
K.
,
Wiegand
,
P.
, and
Brinkmann
,
B.
, “
pMCT118 (D1S80): A New Allelic Ladder and Improved Electrophoretic Separation Lead to the Demonstration of 28 Alleles
,”
International Journal of Legal Medicine
 0937-9827, Vol.
105
,
1992
, pp.
165
-
168
.
23.
Budowle
,
B.
,
Monson
,
K. L.
,
Anoe
,
K.
,
Baechtel
,
F. S.
,
Bergman
,
D.
, et al
, “
A Preliminary Report on Binned General Population Data on Six VNTR Loci in Caucasians, Blacks, and Hispanics from the United States
,”
Crime Laboratory Digest
, Vol.
18
,
1991
, pp.
9
-
26
.
24.
Comey
,
C. T.
,
Koons
,
B. W.
,
Presley
,
K. W.
,
Smerick
,
J. B.
,
Sobieralski
,
C. A.
,
Stanley
,
D. M.
, and
Baechtel
,
F. S.
, “
DNA Extraction Strategies for Amplified Fragment Length Polymorphism Analysis
,”
Journal of Forensic Sciences
 0022-1198 (in press).
25.
Waye
,
J. S.
,
Presley
,
L.
,
Budowle
,
B.
,
Shutler
,
G. G.
, and
Fourney
,
R. M.
, “
A Simple Method for Quantifying Human Genomic DNA in Forensic Specimen Extracts
,”
Biotechniques
, Vol.
7
,
1989
, pp.
852
-
855
.
26.
Baechtel
,
F. S.
,
Smerick
,
J. B.
,
Presley
,
K. W.
, and
Budowle
,
B.
, “
Multigenerational Amplification of a Reference Ladder for Alleles at Locus D1S80
,”
Journal of Forensic Sciences
 0022-1198, Vol.
38
,
1993
, pp.
1176
-
1182
.
27.
Chakraborty
,
R.
,
Smouse
,
P. E.
, and
Neel
,
J. V.
, “
Population Amalgamation and Genetic Variation: Observations on Artificially Agglomerated Tribal Populations of Central and South America
,”
American Journal of Human Genetics
 0002-9297, Vol.
43
,
1988
, pp.
709
-
725
.
28.
Chakraborty
,
R.
,
Fornage
,
M.
,
Guegue
,
R.
, and
Boerwinkle
,
E.
, “
Population Genetics of Hypervariable Loci: Analysis of PCR Based VNTR Polymorphism Within a Population
,” in,
DNA Fingerprinting: Approaches and Applications
,
T.
Burke
,
G.
Dolt
,
A. J.
Jeffreys
, and
R.
Wolff
, Eds.,
Birkhauser Verlag
,
Berlin
,
1991
, pp.
127
-
143
.
29.
Nei
,
M.
and
Roychoudhury
,
A. K.
, “
Sampling Variances of Heterozygosity and Genetic Distance
,”
Genetics
 0016-6731, Vol.
76
,
1974
, pp.
379
-
390
.
30.
Nei
,
M.
, “
Estimation of Average Heterozygosity and Genetic Distance from a Small Number of Individuals
,”
Genetics
 0016-6731, Vol.
89
,
1978
, pp.
583
-
590
.
31.
Weir
,
B. S.
, “
Independence of VNTR Alleles Defined by Fixed Bins
,”
Genetics
 0016-6731, Vol.
130
,
1992
, pp.
873
-
887
.
32.
Guo
,
S. W.
and
Thompson
,
E. A.
, “
Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles
,”
Biometrics
 0006-341X, Vol.
48
,
1992
, pp.
361
-
372
.
33.
Karlin
,
S.
,
Cameron
,
E. C.
, and
Williams
,
P. T.
, “
Sibling and Parent Offspring Correlation Estimation with Variable Family Size
,”
Proceedings at the National Academic Science U.S.A.
, Vol.
78
,
1981
, pp.
2664
-
2668
.
34.
Brown
,
A. H. D.
,
Feldman
,
M. W.
, and
Nevo
,
E.
, “
Multilocus Structure of Natural Populations of Hordeum Spontaneum
,”
Genetics
 0016-6731, Vol.
96
,
1980
, pp.
523
-
536
.
35.
Chakraborty
,
R.
, “
Detection of Nonrandom Association of Alleles from the Distribution of the Number of Heterozygous Loci in a Sample
,”
Genetics
 0016-6731, Vol.
108
,
1984
, pp.
719
-
731
.
36.
Chakraborty
,
R.
,
Zhong
,
Y.
,
Jin
,
L.
, and
Budowle
,
B.
, “
Non-Detectability of Restriction Fragments and Independence of DNA-Fragment Sizes Within and Between Loci in RFLP Typing of DNA
,”
American Journal of Human Genetics
 0002-9297,
1994
, pp.
391
-
401
.
37.
Budowle
,
B.
,
Baechtel
,
F. S.
, and
Comey
,
C. T.
, “
Some Considerations for Use of AMP-FLPs for Identity Testing
,” in,
Advances in Forensic Haemogenetics
4,
C.
Rittner
and
P. M.
Schneider
, Eds.,
Springer-Verlag
,
Berlin
,
1992
, pp.
11
-
17
.
38.
Chakraborty
,
R.
,
Srinivasan
,
M. R.
, and
De Andrade
,
M.
, “
Intraclass and Interclass Correlations of Allele Sizes Within and Between Loci in DNA Typing Data
,”
Genetics
 0016-6731, Vol.
133
,
1993
, pp.
411
-
419
.
39.
Risch
,
N.
and
Devlin
,
B.
, “
On the Probability of Matching DNA Fingerprints
,”
Science
 1095-9203, Vol.
255
,
1992
, pp.
717
-
720
.
40.
Hochmeister
,
M. N.
,
Budowle
,
B.
,
Borer
,
U. V.
, and
Dirnhofer
,
R.
, “
Swiss Population Data on the Loci HLA-DQ, LDLR, GYPA, HBGG, D7S8, Gc, and D1S80
,”
Forensic Science International
 0379-0738, Vol.
67
,
1994
, pp.
175
-
184
.
41.
Hochmeister
,
M. N.
,
Jung
,
M. M.
,
Budowle
,
B.
,
Borer
,
U. V.
, and
Dirnhofer
,
R.
, “
Swiss Population Data on Three Tetrameric Short Tandem Repeat Loci VWA, HUMTHO1, and F13A1—Derived Using Multiplex PCR and Laser Fluorescence Detection
,”
International Journal of Legal Medicine
 0937-9827, Vol.
157
,
1994
, p. 34.
42.
Wong
,
Z.
,
Wilson
,
V.
,
Patel
,
I.
,
Povey
,
S.
, and
Jeffreys
,
A. J.
, “
Characterization of a Panel of Highly Variable Minisatellites Cloned from Human DNA
,”
Annals of Human Genetics
 0003-4800, Vol.
51
,
1987
, pp.
269
-
288
.
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