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Proceedings Papers

Modeling and Simulation of Hydrodynamic Interaction of DNA in a Micro-Fluidic Channel

Sunitha Raghavan, D. Roy Maahapatra, Arnab Samanta
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T02A005, February 4–6, 2013
Paper No: NEMB2013-93127
DOI: https://doi.org/10.1115/NEMB2013-93127
View Paper titled, Modeling and Simulation of Hydrodynamic Interaction of DNA in a Micro-Fluidic Channel
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Topics: DNA, Microfluidics, Modeling, Simulation, Fluids, Chain, Geometry, Microchannels, Boundary-value problems, Center of mass
Proceedings Papers

Multiscale Molecular Dynamics Simulation of Nanobio Membrane in Interaction With Protein

Negin Maftouni, Mehriar Amininasab, MohammadReza Ejtehadi, Farshad Kowsari
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T05A002, February 4–6, 2013
Paper No: NEMB2013-93054
DOI: https://doi.org/10.1115/NEMB2013-93054
View Paper titled, Multiscale Molecular Dynamics Simulation of Nanobio Membrane in Interaction With Protein
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Topics: Membranes, Molecular dynamics simulation, Proteins, Pressure, Surface tension, Atoms, Deformation, Engineering simulation, Intermolecular forces, Lipid bilayers
Proceedings Papers

Multiscale Modeling of Flow Induced Thrombogenicity Using Dissipative Particle Dynamics and Molecular Dynamics

Danny Bluestein, João S. Soares, Peng Zhang, Chao Gao, Seetha Pothapragada, Na Zhang, Marvin J. Slepian, Yuefan Deng
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T05A006, February 4–6, 2013
Paper No: NEMB2013-93094
DOI: https://doi.org/10.1115/NEMB2013-93094
View Paper titled, Multiscale Modeling of Flow Induced Thrombogenicity Using Dissipative Particle Dynamics and Molecular Dynamics
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Topics: Flow (Dynamics), Molecular dynamics, Multiscale modeling, Particle dynamics, Platelets, Thrombosis, Blood, Blood flow, Erythrocytes, Fluids
Proceedings Papers

Tumor-on-Chip: Simulation of Complex Transport Around Tumor

Bongseop Kwak, Kinam Park, Bumsoo Han
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T02A006, February 4–6, 2013
Paper No: NEMB2013-93314
DOI: https://doi.org/10.1115/NEMB2013-93314
View Paper titled, Tumor-on-Chip: Simulation of Complex Transport Around Tumor
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Topics: Simulation, Tumors, Biological tissues, Blood, Bridges (Structures), Drugs, Fluid pressure, Microfluidics, Nanoparticles, Performance
Proceedings Papers

Implementation Issues With Far Field Approximations With Multi-Resolution Biopolymer Simulations

Jeremy Laflin, Mohammad Poursina, Kurt Anderson, Daniel Koerner
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T05A007, February 4–6, 2013
Paper No: NEMB2013-93098
DOI: https://doi.org/10.1115/NEMB2013-93098
View Paper titled, Implementation Issues With Far Field Approximations With Multi-Resolution Biopolymer Simulations
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Topics: Approximation, Biopolymers, Engineering simulation, Resolution (Optics), Simulation, Atoms
Proceedings Papers

Multiscale Modeling and Simulation of a Microbead in an Optical Trapping Process

Mahdi Haghshenas-Jaryani, Nguyen T. Tran, Alan P. Bowling, James A. Drake, Samarendra Mohanty
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T05A003, February 4–6, 2013
Paper No: NEMB2013-93059
DOI: https://doi.org/10.1115/NEMB2013-93059
View Paper titled, Multiscale Modeling and Simulation of a Microbead in an Optical Trapping Process
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Topics: Multiscale modeling, Simulation, Dynamics (Mechanics), Atoms, Cell membranes, Dimensionless numbers, DNA, Drag (Fluid dynamics), Equations of motion, Geometric optics
Proceedings Papers

A Robust Framework for Adaptive Multiscale Modeling of Biopolymers Using Highly Parallelizable Methods

Imad M. Khan, Kurt S. Anderson
Proc. ASME. NEMB2013, ASME 2013 2nd Global Congress on NanoEngineering for Medicine and Biology, V001T05A008, February 4–6, 2013
Paper No: NEMB2013-93099
DOI: https://doi.org/10.1115/NEMB2013-93099
View Paper titled, A Robust Framework for Adaptive Multiscale Modeling of Biopolymers Using Highly Parallelizable Methods
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Topics: Biopolymers, Multiscale modeling, Dynamics (Mechanics), Simulation, Atoms, Algorithms, DNA, Enzymes, Equilibrium (Physics), Molecular dynamics
Proceedings Papers

Multiscale Modeling and Simulation for Nanodiamond-Based Therapeutic Delivery

Wing Kam Liu, Ashfaq Adnan
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 237-238, February 7–10, 2010
Paper No: NEMB2010-13273
DOI: https://doi.org/10.1115/NEMB2010-13273
View Paper titled, Multiscale Modeling and Simulation for Nanodiamond-Based Therapeutic Delivery
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Topics: Multiscale modeling, Simulation, Drugs, Diffusion (Physics), Self-assembly, Cancer, Electrostatics, Fractals, Dimensions, Drug delivery systems
Proceedings Papers

‘ONCOSENSOR’ for Noninvasive High-Specificity Breast Cancer Diagnosis by Carbogen-Enhanced Neutron Femto-Oximetry

Bogdan C. Maglich, Orhan Nalcioglu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 57-58, February 7–10, 2010
Paper No: NEMB2010-13295
DOI: https://doi.org/10.1115/NEMB2010-13295
View Paper titled, ‘ONCOSENSOR’ for Noninvasive High-Specificity Breast Cancer Diagnosis by Carbogen-Enhanced Neutron Femto-Oximetry
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Topics: Cancer, Neutrons, Tumors, Imaging, Biological tissues, Carbon dioxide, Computers, Conceptual design, Engineering simulation, Probes
Proceedings Papers

A Micro-Architectural Based Structural Model for Elastomeric Electrospun Scaffolds

Antonio D’Amore, John A. Stella, David E. Schmidt, William R. Wagner, Michael S. Sacks
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 181-182, February 7–10, 2010
Paper No: NEMB2010-13344
DOI: https://doi.org/10.1115/NEMB2010-13344
View Paper titled, A Micro-Architectural Based Structural Model for Elastomeric Electrospun Scaffolds
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Topics: Biological tissues, Deformation, Density, Design, Engineering simulation, Ester, Fibers, Finite element methods, Finite element model, Mechanical behavior
Proceedings Papers

Electrostatic Self-Assembly of Functionalized Nanodiamonds and Their Binding Capacity With Doxorubicin Drugs

Ashfaq Adnan, Wing Kam Liu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 213-215, February 7–10, 2010
Paper No: NEMB2010-13164
DOI: https://doi.org/10.1115/NEMB2010-13164
View Paper titled, Electrostatic Self-Assembly of Functionalized Nanodiamonds and Their Binding Capacity With Doxorubicin Drugs
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Topics: Drugs, Self-assembly, Cancer, Desorption, Engineering simulation, Simulation, Absorption, Biological cells, Electrostatics, Patient treatment
Proceedings Papers

Divide-and-Conquer Based Adaptive Coarse Grained Simulation of RNA

Mohammad Poursina, Kishor Bhalerao, Kurt Anderson
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 279-281, February 7–10, 2010
Paper No: NEMB2010-13123
DOI: https://doi.org/10.1115/NEMB2010-13123
View Paper titled, Divide-and-Conquer Based Adaptive Coarse Grained Simulation of RNA
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Topics: RNA, Simulation, Modeling, Atoms, Biopolymers, Degrees of freedom, Equations of motion, Mechanical properties, Multiscale modeling, Oscillations
Proceedings Papers

Alkanethiol Self-Assembled Monolayers on Microcantilever Biosensor

Chia-Ching Chou, Shu-Wei Chang, Chuin-Shan Chen
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 41-42, February 7–10, 2010
Paper No: NEMB2010-13214
DOI: https://doi.org/10.1115/NEMB2010-13214
View Paper titled, Alkanethiol Self-Assembled Monolayers on Microcantilever Biosensor
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Topics: Biosensors, Self-assembly, Deformation, Stress, Microcantilevers, Simulation, Fundamental forces (Physics), Molecular dynamics
Proceedings Papers

Characterization of a Magnetic Microactuator for Manipulating Nanoparticles in Gene Delivery Applications

Eva Flick, Wenzhong Li, Jonas Norpoth, Christian Jooss, Gustav Steinhoff, Hans H. Gatzen
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 189-190, February 7–10, 2010
Paper No: NEMB2010-13025
DOI: https://doi.org/10.1115/NEMB2010-13025
View Paper titled, Characterization of a Magnetic Microactuator for Manipulating Nanoparticles in Gene Delivery Applications
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Topics: Microactuators, Nanoparticles, Manufacturing, Poles (Building), Engineering simulation, Magnetic fields, Simulation, Thin films
Proceedings Papers

Simulation of the Diffusion of Doxorubicin (DOX) in Polymer Pores for a Multiscale Nanodiamond Based Drug Delivery System

Paul D. Arendt, Wei Chen, Wing Kam Liu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 225-226, February 7–10, 2010
Paper No: NEMB2010-13209
DOI: https://doi.org/10.1115/NEMB2010-13209
View Paper titled, Simulation of the Diffusion of Doxorubicin (DOX) in Polymer Pores for a Multiscale Nanodiamond Based Drug Delivery System
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Topics: Diffusion (Physics), Drug delivery systems, Polymers, Simulation, Tumors, Biological tissues, Surgery
Proceedings Papers

Modeling and Simulations of the Motion of Bio-Inspired Micro Swimming Robots

A. F. Tabak, S. Yesilyurt
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 51-52, February 7–10, 2010
Paper No: NEMB2010-13268
DOI: https://doi.org/10.1115/NEMB2010-13268
View Paper titled, Modeling and Simulations of the Motion of Bio-Inspired Micro Swimming Robots
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Topics: Biomimetics, Engineering simulation, Modeling, Robots, Simulation, Biomedicine, Finite element analysis, Microorganisms, Rotation, Waves
Proceedings Papers

Structure and Surface Properties of Nanodiamonds: A First-Principles Multiscale Approach

Aditi Datta, Yao Fu, Mesut Kirca, Albert To
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 233-235, February 7–10, 2010
Paper No: NEMB2010-13266
DOI: https://doi.org/10.1115/NEMB2010-13266
View Paper titled, Structure and Surface Properties of Nanodiamonds: A First-Principles Multiscale Approach
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Topics: Bridges (Structures), Classical mechanics, Density functional theory, Drugs, Explosions, Modeling, Molecular mechanics, Multiscale modeling, Oxygen, Quantum mechanics
Proceedings Papers

Magnetic Resonance Imaging of Magnetic Particles for Targeted Drug Delivery

Christian Dahmen, Tim Wortmann, Sergej Fatikow
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 95-96, February 7–10, 2010
Paper No: NEMB2010-13149
DOI: https://doi.org/10.1115/NEMB2010-13149
View Paper titled, Magnetic Resonance Imaging of Magnetic Particles for Targeted Drug Delivery
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Topics: Drug delivery systems, Magnetic particles, Magnetic resonance imaging, Hardware, Cancer, Cardiovascular system, Diseases, Drugs, Feedback, Image formation